Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ppp1r10Protein phosphatase 1, regulatory subunit 10. (805 aa)    
Predicted Functional Partners:
sf3b1
Splicing factor 3b, subunit 1.
   
 0.948
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.937
sf3a2
Splicing factor 3a, subunit 2.
   
 0.933
sf3a3
Splicing factor 3a, subunit 3.
   
 0.927
sf3a1
Splicing factor 3a, subunit 1.
   
 0.909
LOC106964026
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.895
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.895
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.894
rbm17
RNA binding motif protein 17.
   
 0.874
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.858
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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