abcf1 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

abcf1

ATP-binding cassette, sub-family F (GCN20), member 1. (786 aa)

Predicted Functional Partners:

eef1g

0.936

rps18

0.859

abce1

0.854

nudc

0.845

rpl37a

0.832

drg1

0.825

eif2s1

0.814

eif5b

0.771

gcn1

0.770

polr1b

0.764

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
abce1	abcf1	ENSPLAP00000018429	ENSPLAP00000001504	ATP-binding cassette, sub-family E (OABP), member 1.	ATP-binding cassette, sub-family F (GCN20), member 1.	0.854
abce1	drg1	ENSPLAP00000018429	ENSPLAP00000000280	ATP-binding cassette, sub-family E (OABP), member 1.	Developmentally regulated GTP binding protein 1.	0.597
abce1	eif2s1	ENSPLAP00000018429	ENSPLAP00000003800	ATP-binding cassette, sub-family E (OABP), member 1.	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	0.982
abce1	eif5b	ENSPLAP00000018429	ENSPLAP00000027354	ATP-binding cassette, sub-family E (OABP), member 1.	Eukaryotic translation initiation factor 5B.	0.724
abce1	gcn1	ENSPLAP00000018429	ENSPLAP00000030064	ATP-binding cassette, sub-family E (OABP), member 1.	GCN1 activator of EIF2AK4.	0.486
abce1	polr1b	ENSPLAP00000018429	ENSPLAP00000022750	ATP-binding cassette, sub-family E (OABP), member 1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.752
abce1	rpl37a	ENSPLAP00000018429	ENSPLAP00000016918	ATP-binding cassette, sub-family E (OABP), member 1.	Ribosomal protein L37a.	0.855
abce1	rps18	ENSPLAP00000018429	ENSPLAP00000022088	ATP-binding cassette, sub-family E (OABP), member 1.	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.985
abcf1	abce1	ENSPLAP00000001504	ENSPLAP00000018429	ATP-binding cassette, sub-family F (GCN20), member 1.	ATP-binding cassette, sub-family E (OABP), member 1.	0.854
abcf1	drg1	ENSPLAP00000001504	ENSPLAP00000000280	ATP-binding cassette, sub-family F (GCN20), member 1.	Developmentally regulated GTP binding protein 1.	0.825
abcf1	eef1g	ENSPLAP00000001504	ENSPLAP00000031131	ATP-binding cassette, sub-family F (GCN20), member 1.	Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.	0.936
abcf1	eif2s1	ENSPLAP00000001504	ENSPLAP00000003800	ATP-binding cassette, sub-family F (GCN20), member 1.	Eukaryotic translation initiation factor 2, subunit 1 alpha b.	0.814
abcf1	eif5b	ENSPLAP00000001504	ENSPLAP00000027354	ATP-binding cassette, sub-family F (GCN20), member 1.	Eukaryotic translation initiation factor 5B.	0.771
abcf1	gcn1	ENSPLAP00000001504	ENSPLAP00000030064	ATP-binding cassette, sub-family F (GCN20), member 1.	GCN1 activator of EIF2AK4.	0.770
abcf1	nudc	ENSPLAP00000001504	ENSPLAP00000006779	ATP-binding cassette, sub-family F (GCN20), member 1.	NudC nuclear distribution protein.	0.845
abcf1	polr1b	ENSPLAP00000001504	ENSPLAP00000022750	ATP-binding cassette, sub-family F (GCN20), member 1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.764
abcf1	rpl37a	ENSPLAP00000001504	ENSPLAP00000016918	ATP-binding cassette, sub-family F (GCN20), member 1.	Ribosomal protein L37a.	0.832
abcf1	rps18	ENSPLAP00000001504	ENSPLAP00000022088	ATP-binding cassette, sub-family F (GCN20), member 1.	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.859
drg1	abce1	ENSPLAP00000000280	ENSPLAP00000018429	Developmentally regulated GTP binding protein 1.	ATP-binding cassette, sub-family E (OABP), member 1.	0.597
drg1	abcf1	ENSPLAP00000000280	ENSPLAP00000001504	Developmentally regulated GTP binding protein 1.	ATP-binding cassette, sub-family F (GCN20), member 1.	0.825