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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB29RAB29, member RAS oncogene family. (213 aa)    
Predicted Functional Partners:
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.788
ENSPLAP00000019989
Uncharacterized protein.
    
 0.759
gak
Cyclin G associated kinase.
    
 
 0.749
LOC106942307
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.685
hps1
HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.
     
 0.625
bag5
BCL2 associated athanogene 5.
    
 
 0.601
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 
 0.562
pm20d1
Peptidase M20 domain containing 1, tandem duplicate 2.
      
 0.545
c9orf72
Zgc:100846.
    
 
 0.535
atg9a
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
      
 0.515
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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