Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106938067Cryptochrome circadian regulator 3a. (654 aa)    
Predicted Functional Partners:
per1
Period circadian clock 1b.
    
 0.917
timeless
Timeless circadian clock.
    
 0.913
LOC106955727
Neuronal PAS domain protein 2.
    
 0.889
fbxl15
F-box and leucine-rich repeat protein 15.
    
 0.886
arntl
Aryl hydrocarbon receptor nuclear translocator-like 1a.
   
 0.885
LOC106954374
Clock circadian regulator b.
    
 0.883
CLOCK
Clock circadian regulator a.
    
 0.883
LOC106950927
Aryl hydrocarbon receptor nuclear translocator-like 2.
   
 0.870
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
   
 0.870
LOC106941729
PAS domain-containing protein.
    
 0.802
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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