Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106950556Interferon regulatory factor. (291 aa)    
Predicted Functional Partners:
mdm2
MDM2 proto-oncogene; Belongs to the MDM2/MDM4 family.
    
 0.991
ENSPLAP00000013662
E1A binding protein p300 b.
    
 0.978
LOC106934613
Interferon regulatory factor.
   
 0.951
LOC106942924
STIP1 homology and U-Box containing protein 1.
    
 
 0.918
LOC106947562
STIP1 homology and U box-containing protein 1-like.
    
 
 0.918
LOC106954437
Signal transducer and activator of transcription.
   
 0.896
stat3
Signal transducer and activator of transcription.
   
 0.879
crebbp
CREB binding protein a.
    
 0.867
LOC106942609
CREB binding protein b.
    
 0.867
ENSPLAP00000015298
Signal transducer and activator of transcription 1a.
   
 0.852
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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