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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
synprSynaptoporin. (283 aa)    
Predicted Functional Partners:
vamp2
Vesicle-associated membrane protein 2.
   
 0.689
ENSPLAP00000009903
Vesicle-associated membrane protein 1.
   
 0.689
ENSPLAP00000021726
Zgc:92912.
   
 0.689
nans
N-acetylneuraminic acid synthase a.
     
 0.581
gne
Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.
     
 0.560
VAMP3
Vesicle associated membrane protein 3.
    
 0.543
LOC106949858
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.512
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.512
nagk
N-acetylglucosamine kinase.
     
 0.501
LOC106948285
Meiosis 1 associated protein.
     
 0.501
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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