tmem119 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tmem119

Transmembrane protein 119a. (204 aa)

Predicted Functional Partners:

LOC106960844

0.730

LOC106959791

0.519

galc

0.509

ENSPLAP00000006846

0.492

LOC106940123

0.424

LOC106938463

0.412

LOC106946887

0.412

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000006846	galc	ENSPLAP00000006846	ENSPLAP00000010386	Myelin basic protein b.	Galactosylceramidase b.	0.713
ENSPLAP00000006846	tmem119	ENSPLAP00000006846	ENSPLAP00000001563	Myelin basic protein b.	Transmembrane protein 119a.	0.492
LOC106938463	LOC106940123	ENSPLAP00000027342	ENSPLAP00000005569	Apolipoprotein Eb.	Uncharacterized protein.	0.706
LOC106938463	LOC106946887	ENSPLAP00000027342	ENSPLAP00000028349	Apolipoprotein Eb.	Apolipoprotein Ea.	0.558
LOC106938463	LOC106959791	ENSPLAP00000027342	ENSPLAP00000023715	Apolipoprotein Eb.	Cystatin domain-containing protein.	0.719
LOC106938463	LOC106960844	ENSPLAP00000027342	ENSPLAP00000029722	Apolipoprotein Eb.	Purinergic receptor P2Y12.	0.792
LOC106938463	tmem119	ENSPLAP00000027342	ENSPLAP00000001563	Apolipoprotein Eb.	Transmembrane protein 119a.	0.412
LOC106940123	LOC106938463	ENSPLAP00000005569	ENSPLAP00000027342	Uncharacterized protein.	Apolipoprotein Eb.	0.706
LOC106940123	LOC106946887	ENSPLAP00000005569	ENSPLAP00000028349	Uncharacterized protein.	Apolipoprotein Ea.	0.531
LOC106940123	LOC106959791	ENSPLAP00000005569	ENSPLAP00000023715	Uncharacterized protein.	Cystatin domain-containing protein.	0.535
LOC106940123	LOC106960844	ENSPLAP00000005569	ENSPLAP00000029722	Uncharacterized protein.	Purinergic receptor P2Y12.	0.733
LOC106940123	tmem119	ENSPLAP00000005569	ENSPLAP00000001563	Uncharacterized protein.	Transmembrane protein 119a.	0.424
LOC106946887	LOC106938463	ENSPLAP00000028349	ENSPLAP00000027342	Apolipoprotein Ea.	Apolipoprotein Eb.	0.558
LOC106946887	LOC106940123	ENSPLAP00000028349	ENSPLAP00000005569	Apolipoprotein Ea.	Uncharacterized protein.	0.531
LOC106946887	LOC106959791	ENSPLAP00000028349	ENSPLAP00000023715	Apolipoprotein Ea.	Cystatin domain-containing protein.	0.605
LOC106946887	LOC106960844	ENSPLAP00000028349	ENSPLAP00000029722	Apolipoprotein Ea.	Purinergic receptor P2Y12.	0.666
LOC106946887	tmem119	ENSPLAP00000028349	ENSPLAP00000001563	Apolipoprotein Ea.	Transmembrane protein 119a.	0.412
LOC106959791	LOC106938463	ENSPLAP00000023715	ENSPLAP00000027342	Cystatin domain-containing protein.	Apolipoprotein Eb.	0.719
LOC106959791	LOC106940123	ENSPLAP00000023715	ENSPLAP00000005569	Cystatin domain-containing protein.	Uncharacterized protein.	0.535
LOC106959791	LOC106946887	ENSPLAP00000023715	ENSPLAP00000028349	Cystatin domain-containing protein.	Apolipoprotein Ea.	0.605