Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC106937235Si:ch211-191d15.2. (455 aa)    
Predicted Functional Partners:
LOC106946035
Uncharacterized protein.
     
 0.622
wdr90
WD repeat domain 90.
    
   0.481
LOC106947310
Fibrinogen alpha chain.
    
 
 0.471
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
  0.437
cask
Uncharacterized protein; Belongs to the MAGUK family.
   
  0.423
LOC106956946
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
  0.423
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 0.412
ENSPLAP00000000084
Small nuclear ribonucleoprotein polypeptide F.
    
  0.411
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
  0.410
snrpg
Small nuclear ribonucleoprotein G.
    
  0.410
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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