ENSPLAP00000001631 protein (Poecilia latipinna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPLAP00000001631

CARD domain-containing protein. (126 aa)

Predicted Functional Partners:

fancm

0.716

lin52

0.527

lin54

0.527

LOC106964595

0.487

lin9

0.461

med14

0.450

med23

0.448

kremen1

0.437

LOC106945155

0.437

wscd2

0.437

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000001631	LOC106945155	ENSPLAP00000001631	ENSPLAP00000007887	CARD domain-containing protein.	Cortistatin.	0.437
ENSPLAP00000001631	LOC106964595	ENSPLAP00000001631	ENSPLAP00000005146	CARD domain-containing protein.	Uncharacterized protein.	0.487
ENSPLAP00000001631	fancm	ENSPLAP00000001631	ENSPLAP00000011125	CARD domain-containing protein.	Uncharacterized protein.	0.716
ENSPLAP00000001631	kremen1	ENSPLAP00000001631	ENSPLAP00000003919	CARD domain-containing protein.	Kringle containing transmembrane protein 1.	0.437
ENSPLAP00000001631	lin52	ENSPLAP00000001631	ENSPLAP00000011142	CARD domain-containing protein.	Lin-52 DREAM MuvB core complex component.	0.527
ENSPLAP00000001631	lin54	ENSPLAP00000001631	ENSPLAP00000021037	CARD domain-containing protein.	Lin-54 DREAM MuvB core complex component.	0.527
ENSPLAP00000001631	lin9	ENSPLAP00000001631	ENSPLAP00000019089	CARD domain-containing protein.	Lin-9 DREAM MuvB core complex component.	0.461
ENSPLAP00000001631	med14	ENSPLAP00000001631	ENSPLAP00000014684	CARD domain-containing protein.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.450
ENSPLAP00000001631	med23	ENSPLAP00000001631	ENSPLAP00000019133	CARD domain-containing protein.	Mediator complex subunit 23.	0.448
ENSPLAP00000001631	wscd2	ENSPLAP00000001631	ENSPLAP00000020099	CARD domain-containing protein.	WSC domain containing 2.	0.437
LOC106945155	ENSPLAP00000001631	ENSPLAP00000007887	ENSPLAP00000001631	Cortistatin.	CARD domain-containing protein.	0.437
LOC106945155	fancm	ENSPLAP00000007887	ENSPLAP00000011125	Cortistatin.	Uncharacterized protein.	0.972
LOC106964595	ENSPLAP00000001631	ENSPLAP00000005146	ENSPLAP00000001631	Uncharacterized protein.	CARD domain-containing protein.	0.487
fancm	ENSPLAP00000001631	ENSPLAP00000011125	ENSPLAP00000001631	Uncharacterized protein.	CARD domain-containing protein.	0.716
fancm	LOC106945155	ENSPLAP00000011125	ENSPLAP00000007887	Uncharacterized protein.	Cortistatin.	0.972
fancm	kremen1	ENSPLAP00000011125	ENSPLAP00000003919	Uncharacterized protein.	Kringle containing transmembrane protein 1.	0.971
fancm	wscd2	ENSPLAP00000011125	ENSPLAP00000020099	Uncharacterized protein.	WSC domain containing 2.	0.971
kremen1	ENSPLAP00000001631	ENSPLAP00000003919	ENSPLAP00000001631	Kringle containing transmembrane protein 1.	CARD domain-containing protein.	0.437
kremen1	fancm	ENSPLAP00000003919	ENSPLAP00000011125	Kringle containing transmembrane protein 1.	Uncharacterized protein.	0.971
lin52	ENSPLAP00000001631	ENSPLAP00000011142	ENSPLAP00000001631	Lin-52 DREAM MuvB core complex component.	CARD domain-containing protein.	0.527