Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106940414Uncharacterized protein. (1286 aa)    
Predicted Functional Partners:
LOC106958607
ATP-binding cassette, sub-family C (CFTR/MRP), member 4.
  
  
 
0.901
ABCC4
ATP binding cassette subfamily C member 4.
  
  
 
0.901
gopc
Golgi-associated PDZ and coiled-coil motif containing.
    
 0.635
derl1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 0.624
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 0.612
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
  0.609
LOC106961733
Rap guanine nucleotide exchange factor (GEF) 4.
    
 0.606
LOC106951519
ATP-binding cassette, sub-family G (WHITE), member 1.
   
 0.584
abcg4
ATP-binding cassette, sub-family G (WHITE), member 4a.
   
 0.584
tiprl
TIP41, TOR signaling pathway regulator-like (S. cerevisiae).
   
 0.547
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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