brms1 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

brms1

BRMS1 transcriptional repressor and anoikis regulator. (275 aa)

Predicted Functional Partners:

sap30l

0.998

sinhcaf

0.985

LOC106949495

0.973

ing1

0.939

arid4a

0.935

arid4b

0.935

LOC106952289

0.929

ENSPLAP00000014870

0.929

LOC106938108

0.907

hdac8

0.900

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000014870	LOC106938108	ENSPLAP00000014870	ENSPLAP00000019804	CAF1C_H4-bd domain-containing protein.	SIN3-HDAC complex associated factor, like.	0.753
ENSPLAP00000014870	arid4a	ENSPLAP00000014870	ENSPLAP00000002206	CAF1C_H4-bd domain-containing protein.	AT rich interactive domain 4A (RBP1-like).	0.967
ENSPLAP00000014870	arid4b	ENSPLAP00000014870	ENSPLAP00000024405	CAF1C_H4-bd domain-containing protein.	Translocase of outer mitochondrial membrane 20.	0.967
ENSPLAP00000014870	brms1	ENSPLAP00000014870	ENSPLAP00000001706	CAF1C_H4-bd domain-containing protein.	BRMS1 transcriptional repressor and anoikis regulator.	0.929
ENSPLAP00000014870	hdac8	ENSPLAP00000014870	ENSPLAP00000002617	CAF1C_H4-bd domain-containing protein.	Histone deacetylase 8; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.914
ENSPLAP00000014870	ing1	ENSPLAP00000014870	ENSPLAP00000029007	CAF1C_H4-bd domain-containing protein.	Inhibitor of growth protein.	0.931
ENSPLAP00000014870	sap30l	ENSPLAP00000014870	ENSPLAP00000029569	CAF1C_H4-bd domain-containing protein.	Sap30-like.	0.967
ENSPLAP00000014870	sinhcaf	ENSPLAP00000014870	ENSPLAP00000011989	CAF1C_H4-bd domain-containing protein.	SIN3-HDAC complex associated factor.	0.850
LOC106938108	ENSPLAP00000014870	ENSPLAP00000019804	ENSPLAP00000014870	SIN3-HDAC complex associated factor, like.	CAF1C_H4-bd domain-containing protein.	0.753
LOC106938108	LOC106952289	ENSPLAP00000019804	ENSPLAP00000008876	SIN3-HDAC complex associated factor, like.	Retinoblastoma binding protein 4.	0.753
LOC106938108	arid4a	ENSPLAP00000019804	ENSPLAP00000002206	SIN3-HDAC complex associated factor, like.	AT rich interactive domain 4A (RBP1-like).	0.825
LOC106938108	arid4b	ENSPLAP00000019804	ENSPLAP00000024405	SIN3-HDAC complex associated factor, like.	Translocase of outer mitochondrial membrane 20.	0.825
LOC106938108	brms1	ENSPLAP00000019804	ENSPLAP00000001706	SIN3-HDAC complex associated factor, like.	BRMS1 transcriptional repressor and anoikis regulator.	0.907
LOC106938108	hdac8	ENSPLAP00000019804	ENSPLAP00000002617	SIN3-HDAC complex associated factor, like.	Histone deacetylase 8; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.499
LOC106938108	ing1	ENSPLAP00000019804	ENSPLAP00000029007	SIN3-HDAC complex associated factor, like.	Inhibitor of growth protein.	0.903
LOC106938108	sap30l	ENSPLAP00000019804	ENSPLAP00000029569	SIN3-HDAC complex associated factor, like.	Sap30-like.	0.892
LOC106938108	sinhcaf	ENSPLAP00000019804	ENSPLAP00000011989	SIN3-HDAC complex associated factor, like.	SIN3-HDAC complex associated factor.	0.548
LOC106949495	brms1	ENSPLAP00000015842	ENSPLAP00000001706	Uncharacterized protein.	BRMS1 transcriptional repressor and anoikis regulator.	0.973
LOC106952289	LOC106938108	ENSPLAP00000008876	ENSPLAP00000019804	Retinoblastoma binding protein 4.	SIN3-HDAC complex associated factor, like.	0.753
LOC106952289	arid4a	ENSPLAP00000008876	ENSPLAP00000002206	Retinoblastoma binding protein 4.	AT rich interactive domain 4A (RBP1-like).	0.967