Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC106946581DEAH (Asp-Glu-Ala-His) box helicase 15. (731 aa)    
Predicted Functional Partners:
sf3b3
Splicing factor 3b, subunit 3.
   
 0.988
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 0.981
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.977
sf3a1
Splicing factor 3a, subunit 1.
   
 0.976
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.975
sf3b1
Splicing factor 3b, subunit 1.
   
 0.974
bysl
Bystin-like.
   
 
 0.974
rbm17
RNA binding motif protein 17.
   
 0.972
sf3a3
Splicing factor 3a, subunit 3.
   
 0.970
utp3
UTP3 small subunit processome component.
   
 0.969
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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