Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC106939612Tetraspanin. (242 aa)    
Predicted Functional Partners:
tspan14
Tetraspanin.
      
 0.516
tspan31
Tetraspanin 31; Belongs to the tetraspanin (TM4SF) family.
      
 0.511
LOC106935062
RAB3D, member RAS oncogene family, b.
      
 0.508
oxa1l
OXA1L mitochondrial inner membrane protein.
      
 0.472
GOLM1
Golgi membrane protein 1.
      
 0.435
LOC106958767
DAN domain family, member 5.
      
 0.433
ENSPLAP00000000084
Small nuclear ribonucleoprotein polypeptide F.
      
 0.432
ENSPLAP00000000113
Transmembrane 4 L six family member 18.
      
 0.412
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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