LOC106939615 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106939615

Zinc finger protein 653. (616 aa)

Predicted Functional Partners:

rnf166

0.748

dcaf6

0.708

rab28

0.705

zswim7

0.685

actl6a

0.678

crbn

0.661

LOC106952340

0.613

nae1

0.600

UBA3

0.598

LOC106953339

0.598

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106939615	LOC106952340	ENSPLAP00000001749	ENSPLAP00000007168	Zinc finger protein 653.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.613
LOC106939615	LOC106953339	ENSPLAP00000001749	ENSPLAP00000018344	Zinc finger protein 653.	Ubiquitin-like modifier activating enzyme 3.	0.598
LOC106939615	UBA3	ENSPLAP00000001749	ENSPLAP00000006977	Zinc finger protein 653.	Ubiquitin like modifier activating enzyme 3.	0.598
LOC106939615	actl6a	ENSPLAP00000001749	ENSPLAP00000024877	Zinc finger protein 653.	Actin-like 6A; Belongs to the actin family.	0.678
LOC106939615	crbn	ENSPLAP00000001749	ENSPLAP00000005164	Zinc finger protein 653.	Cereblon.	0.661
LOC106939615	dcaf6	ENSPLAP00000001749	ENSPLAP00000016550	Zinc finger protein 653.	Ddb1 and cul4 associated factor 6.	0.708
LOC106939615	nae1	ENSPLAP00000001749	ENSPLAP00000006411	Zinc finger protein 653.	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	0.600
LOC106939615	rab28	ENSPLAP00000001749	ENSPLAP00000004337	Zinc finger protein 653.	Uncharacterized protein.	0.705
LOC106939615	rnf166	ENSPLAP00000001749	ENSPLAP00000031139	Zinc finger protein 653.	Ring finger protein 166.	0.748
LOC106939615	zswim7	ENSPLAP00000001749	ENSPLAP00000017900	Zinc finger protein 653.	Zinc finger, SWIM-type containing 7.	0.685
LOC106952340	LOC106939615	ENSPLAP00000007168	ENSPLAP00000001749	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Zinc finger protein 653.	0.613
LOC106952340	actl6a	ENSPLAP00000007168	ENSPLAP00000024877	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Actin-like 6A; Belongs to the actin family.	0.551
LOC106953339	LOC106939615	ENSPLAP00000018344	ENSPLAP00000001749	Ubiquitin-like modifier activating enzyme 3.	Zinc finger protein 653.	0.598
LOC106953339	UBA3	ENSPLAP00000018344	ENSPLAP00000006977	Ubiquitin-like modifier activating enzyme 3.	Ubiquitin like modifier activating enzyme 3.	0.900
LOC106953339	nae1	ENSPLAP00000018344	ENSPLAP00000006411	Ubiquitin-like modifier activating enzyme 3.	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	0.996
LOC106953339	rnf166	ENSPLAP00000018344	ENSPLAP00000031139	Ubiquitin-like modifier activating enzyme 3.	Ring finger protein 166.	0.565
UBA3	LOC106939615	ENSPLAP00000006977	ENSPLAP00000001749	Ubiquitin like modifier activating enzyme 3.	Zinc finger protein 653.	0.598
UBA3	LOC106953339	ENSPLAP00000006977	ENSPLAP00000018344	Ubiquitin like modifier activating enzyme 3.	Ubiquitin-like modifier activating enzyme 3.	0.900
UBA3	nae1	ENSPLAP00000006977	ENSPLAP00000006411	Ubiquitin like modifier activating enzyme 3.	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	0.996
UBA3	rnf166	ENSPLAP00000006977	ENSPLAP00000031139	Ubiquitin like modifier activating enzyme 3.	Ring finger protein 166.	0.565