Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
snx15Sorting nexin 15. (385 aa)    
Predicted Functional Partners:
LOC106947774
Receptor expression-enhancing protein.
    
 
 0.941
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
 0.873
rint1
RAD50 interactor 1.
   
 0.862
stx18
Syntaxin 18.
    
 0.860
LOC106943426
Zw10 kinetochore protein.
    
 0.850
nbas
Neuroblastoma amplified sequence.
    
 0.816
ENSPLAP00000017815
Uncharacterized protein.
    
 0.816
LOC106963248
Reticulon.
    
   0.776
LOC106955740
Reticulon.
    
   0.776
LOC106938601
Reticulon.
    
   0.776
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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