Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TFAP4Transcription factor AP-4. (336 aa)    
Predicted Functional Partners:
BPTF
Bromodomain PHD finger transcription factor.
    
 
 0.833
LOC106959599
Bromodomain PHD finger transcription factor.
    
 
 0.833
ENSPLAP00000009869
Uncharacterized protein.
    
   0.759
fbxw11
F-box and WD repeat domain containing 11b.
    
   0.759
cabin1
Calcineurin binding protein 1.
    
   0.721
taf6l
TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.
      
 0.688
pde9a
Phosphodiesterase 9A like; Belongs to the cyclic nucleotide phosphodiesterase family.
    
   0.582
pld6
Phospholipase D family, member 6.
      
 0.534
fmr1
Fragile X mental retardation 1.
      
 0.522
hbs1l
HBS1-like translational GTPase.
      
 0.517
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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