Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106939606RUN domain-containing protein. (461 aa)    
Predicted Functional Partners:
cetn3
Uncharacterized protein.
    
   0.769
cetn2
Centrin, EF-hand protein, 2.
    
   0.602
LOC106948217
Centrin 4.
    
   0.602
rundc1
RUN domain containing 1.
    
 
 0.580
pex1
Peroxisomal biogenesis factor 1.
      
 0.539
glt1d1
Glycosyltransferase 1 domain containing 1.
      
 0.524
ccdc186
Si:ch211-225b10.4.
      
 0.520
LOC106949884
Uncharacterized protein.
    
 
 0.501
ENSPLAP00000009159
RAB9B, member RAS oncogene family.
    
 
 0.501
LOC106937791
Uncharacterized protein.
    
 
 0.501
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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