STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106950014Deoxyribonuclease; Belongs to the DNase I family. (286 aa)    
Predicted Functional Partners:
LOC106939540
TANK-binding kinase 1.
   
 0.733
ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.733
LOC106947210
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.640
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.640
LOC106956159
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.640
traf2
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.640
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.614
QPRT
Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Involved in the catabolism of quinolinic acid (QA). Belongs to the NadC/ModD family.
    
 0.504
sdha
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
     
 0.503
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
   
 0.485
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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