Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000001799Uncharacterized protein. (372 aa)    
Predicted Functional Partners:
LOC106957748
Homeobox domain-containing protein.
   
  
 0.660
LOC106965240
UNC homeobox.
   
  
 0.660
ENSPLAP00000014192
NDK domain-containing protein.
    
   0.596
wdr90
WD repeat domain 90.
    
   0.516
krcc1
C2H2-type domain-containing protein.
      
 0.505
ldb1
LIM-domain binding 1b.
    
 0.486
LOC106947875
LIM domain binding 2a.
    
 0.486
LOC106961067
LIM domain binding 1a.
    
 0.486
lhx4
LIM homeobox 4.
    
 0.460
LHX3
LIM homeobox 3.
    
 0.460
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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