STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000001799Uncharacterized protein. (372 aa)    
Predicted Functional Partners:
LOC106961202
MADS-box domain-containing protein.
    
 0.561
srf
Serum response factor b.
    
 0.561
ldb1
LIM-domain binding 1b.
    
 0.523
LOC106947875
LIM domain binding 2a.
    
 0.523
LOC106961067
LIM domain binding 1a.
    
 0.523
cep192
Centrosomal protein 192.
  
 
 
 0.444
lhx4
LIM homeobox 4.
    
 0.442
LHX3
LIM homeobox 3.
    
 0.442
LOC106958419
Uncharacterized protein.
    
 0.440
LOC106953245
GATA binding protein 2a.
    
 0.440
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.