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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106944092NACHT domain-containing protein. (660 aa)    
Predicted Functional Partners:
ripk2
Receptor-interacting serine-threonine kinase 2.
   
 0.628
pycard
Uncharacterized protein.
   
 0.620
ENSPLAP00000026153
CARD domain-containing protein.
   
 0.620
nek7
NIMA-related kinase 7; Belongs to the protein kinase superfamily.
    
 0.597
rfx5
Regulatory factor X, 5.
    
 0.587
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
 0.571
LOC106942468
Heat shock protein 90, alpha (cytosolic), class B member 1.
    
  0.558
LOC106938010
V-rel avian reticuloendotheliosis viral oncogene homolog A.
   
 0.548
REL
REL proto-oncogene, NF-kB subunit.
   
 0.548
rfxank
Regulatory factor X-associated ankyrin-containing protein.
    
 0.547
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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