Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106938408Uncharacterized protein. (69 aa)    
Predicted Functional Partners:
myl1
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.864
surf1
SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.
   
 
 0.808
LOC106965001
Cytochrome C oxidase assembly factor 3a.
   
 0.795
cmc1
COX assembly mitochondrial protein.
   
 
 0.783
ENSPLAP00000005209
Troponin C type 2 (fast).
   
 0.752
ENSPLAP00000022496
EF-hand domain-containing protein.
   
 0.752
TNNC1
Troponin C type 1a (slow).
   
 0.719
ENSPLAP00000020762
Troponin C type 1b (slow).
   
 0.719
ENSPLAP00000000832
Uncharacterized protein.
   
 0.693
ENSPLAP00000000837
Troponin I4a.
   
 0.693
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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