Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106944076Uncharacterized protein. (200 aa)    
Predicted Functional Partners:
tbx20
T-box transcription factor 20.
    
   0.885
blvrb
Biliverdin reductase B.
  
 
 0.874
phf13
PHD finger protein 13.
    
   0.797
slc25a21
Solute carrier family 25 member 21; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
   0.714
rgn
Regucalcin.
  
 
 0.692
sord
Sorbitol dehydrogenase.
  
 
 0.648
kars1
Lysine--tRNA ligase.
  
    0.629
tmem254
Transmembrane protein 254.
  
 
 0.627
LOC106937081
Zgc:55781.
      
 0.622
hmox1
Heme oxygenase 1a.
     
 0.608
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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