Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rnf19aRBR-type E3 ubiquitin transferase. (839 aa)    
Predicted Functional Partners:
ube2l3
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.679
rps27a
Ribosomal protein S27a.
    
  0.669
zfand4
Zinc finger, AN1-type domain 4.
    
 0.613
ENSPLAP00000015559
Ubiquitin-like domain-containing protein.
    
  0.608
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.608
rnf7
Ring finger protein 7.
    
 0.602
rnf19b
RBR-type E3 ubiquitin transferase.
   
    0.582
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.575
psmc3
Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.
     
 0.559
ENSPLAP00000001003
Ubiquitin-like domain-containing protein.
    
  0.536
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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