ptger3 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ptger3

Prostaglandin E receptor 3 (subtype EP3). (387 aa)

Predicted Functional Partners:

LOC106955270

0.741

LOC106947790

0.741

LOC106963571

0.741

LOC106963572

0.741

LOC106955271

0.726

LOC106954508

0.726

C8orf37

0.721

emc4

0.719

ENSPLAP00000005575

0.700

dctn5

0.663

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C8orf37	ptger3	ENSPLAP00000001326	ENSPLAP00000001857	Chromosome 8 open reading frame 37.	Prostaglandin E receptor 3 (subtype EP3).	0.721
ENSPLAP00000005575	ptger3	ENSPLAP00000005575	ENSPLAP00000001857	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	Prostaglandin E receptor 3 (subtype EP3).	0.700
LOC106947790	LOC106954508	ENSPLAP00000005857	ENSPLAP00000003119	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	G protein subunit alpha q.	0.545
LOC106947790	LOC106955270	ENSPLAP00000005857	ENSPLAP00000000830	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.543
LOC106947790	LOC106955271	ENSPLAP00000005857	ENSPLAP00000000824	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.635
LOC106947790	LOC106963571	ENSPLAP00000005857	ENSPLAP00000015560	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Uncharacterized protein.	0.543
LOC106947790	LOC106963572	ENSPLAP00000005857	ENSPLAP00000029366	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha 14a.	0.545
LOC106947790	ptger3	ENSPLAP00000005857	ENSPLAP00000001857	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Prostaglandin E receptor 3 (subtype EP3).	0.741
LOC106954508	LOC106947790	ENSPLAP00000003119	ENSPLAP00000005857	G protein subunit alpha q.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.545
LOC106954508	LOC106955270	ENSPLAP00000003119	ENSPLAP00000000830	G protein subunit alpha q.	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.545
LOC106954508	LOC106955271	ENSPLAP00000003119	ENSPLAP00000000824	G protein subunit alpha q.	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.553
LOC106954508	LOC106963571	ENSPLAP00000003119	ENSPLAP00000015560	G protein subunit alpha q.	Uncharacterized protein.	0.901
LOC106954508	LOC106963572	ENSPLAP00000003119	ENSPLAP00000029366	G protein subunit alpha q.	Guanine nucleotide binding protein (G protein), alpha 14a.	0.547
LOC106954508	ptger3	ENSPLAP00000003119	ENSPLAP00000001857	G protein subunit alpha q.	Prostaglandin E receptor 3 (subtype EP3).	0.726
LOC106955270	LOC106947790	ENSPLAP00000000830	ENSPLAP00000005857	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.543
LOC106955270	LOC106954508	ENSPLAP00000000830	ENSPLAP00000003119	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	G protein subunit alpha q.	0.545
LOC106955270	LOC106955271	ENSPLAP00000000830	ENSPLAP00000000824	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.635
LOC106955270	LOC106963571	ENSPLAP00000000830	ENSPLAP00000015560	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	Uncharacterized protein.	0.543
LOC106955270	LOC106963572	ENSPLAP00000000830	ENSPLAP00000029366	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	Guanine nucleotide binding protein (G protein), alpha 14a.	0.545
LOC106955270	ptger3	ENSPLAP00000000830	ENSPLAP00000001857	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	Prostaglandin E receptor 3 (subtype EP3).	0.741