STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ergic3ERGIC and golgi 3. (384 aa)    
Predicted Functional Partners:
gtpbp3
GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 0.986
LOC106956598
ERGIC and golgi 2.
   
 
0.966
LOC106957553
Uncharacterized protein.
   
 
0.965
vps45
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
 
      0.899
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.875
cope
Coatomer protein complex, subunit epsilon.
   
 
 0.683
spcs1
Signal peptidase complex subunit 1.
    
   0.657
dao
D-amino-acid oxidase, tandem duplicate 2.
     
 0.618
pipox
Pipecolic acid oxidase.
   
 
 0.618
ddo
Zgc:172341.
     
 0.618
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.