Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
riok2RIO kinase 2 (yeast). (520 aa)    
Predicted Functional Partners:
ltv1
LTV1 ribosome biogenesis factor.
   
 0.998
bysl
Bystin-like.
   
 0.998
LOC106943202
PIN_6 domain-containing protein.
   
 0.995
tsr1
TSR1 ribosome maturation factor.
   
 0.995
nob1
NIN1 (RPN12) binding protein 1 homolog.
   
 0.995
rrp12
Ribosomal RNA processing 12 homolog.
   
 
 0.990
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.986
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
 0.980
pno1
Partner of NOB1 homolog.
   
 0.979
LOC106952916
Uncharacterized protein.
   
 
 0.978
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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