Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000001910Uncharacterized protein. (330 aa)    
Predicted Functional Partners:
LOC106949313
GABA type A receptor associated protein like 2.
    
 0.953
gabarap
GABA(A) receptor-associated protein b.
    
 0.953
map1lc3b
Microtubule-associated protein 1 light chain 3 beta.
    
 0.948
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
    
 0.948
LOC106952576
Zgc:92606.
    
 0.926
LOC106936830
Microtubule-associated protein 1 light chain 3 gamma, like.
    
 0.926
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
    
 0.926
LOC106958411
Uncharacterized protein.
     
 0.902
rab7a
RAB7a, member RAS oncogene family.
     
 0.902
LOC106964934
Si:dkey-13a21.4.
     
  0.900
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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