Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106938039Uncharacterized protein. (135 aa)    
Predicted Functional Partners:
sdsl
Serine dehydratase-like.
  
 0.827
SDS
Serine dehydratase.
  
 0.827
pqbp1
Polyglutamine binding protein 1.
    
   0.800
LOC106956517
Si:ch73-263o4.3.
  
 0.756
LOC106948102
PALP domain-containing protein.
  
 0.756
ugcg
UDP-glucose ceramide glucosyltransferase.
  
 0.731
SUGP1
SURP and G-patch domain containing 1.
    
   0.705
EEF2
Eukaryotic translation elongation factor 2b.
   
 0.697
LOC106959388
Tr-type G domain-containing protein.
   
 0.697
clpp
ATP-dependent Clp protease proteolytic subunit.
  
  
 0.694
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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