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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syt9Synaptotagmin IXb. (505 aa)    
Predicted Functional Partners:
LOC106954136
Intersectin 2b.
     
 0.653
ENSPLAP00000017806
Uncharacterized protein.
     
 0.653
ENSPLAP00000030866
Uncharacterized protein.
     
 0.653
ENSPLAP00000030875
Uncharacterized protein.
     
 0.653
VAMP3
Vesicle associated membrane protein 3.
     
 0.633
syt1
Synaptotagmin Ia.
   
0.623
LOC106959829
Uncharacterized protein.
    
0.619
LOC106934796
Synaptotagmin IIa.
    
0.619
SYT8
Synaptotagmin 8.
    
 
0.612
LOC106956224
Synaptotagmin Ib.
    
0.610
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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