Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
PRIMA1Proline rich membrane anchor 1. (139 aa)    
Predicted Functional Partners:
LOC106939682
Si:dkey-43k4.5; Belongs to the potassium channel family.
      
 0.846
C1orf43
Chromosome 1 open reading frame 43.
      
 0.661
glipr2
GLI pathogenesis-related 2, like; Belongs to the CRISP family.
      
 0.547
ENSPLAP00000007384
Calcium binding protein 2b.
      
 0.537
cabp2
Calcium binding protein 2a.
      
 0.537
ENSPLAP00000025968
Calcium binding protein 1a.
      
 0.537
cabp1
Uncharacterized protein.
      
 0.537
ppp1r16b
Protein phosphatase 1, regulatory subunit 16B.
      
 0.521
LOC106951698
DEAD (Asp-Glu-Ala-Asp) box helicase 24.
      
 0.510
ttc7a
Tetratricopeptide repeat domain 7A.
      
 0.486
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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