Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
emid1EMI domain-containing protein. (484 aa)    
Predicted Functional Partners:
mrpl45
Mitochondrial ribosomal protein L45.
      
 0.710
LOC106951603
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.
    
 0.679
LOC106941016
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.
    
 0.679
nup43
Nucleoporin 43.
     
 0.663
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
      
 0.643
trappc2
Trafficking protein particle complex 2.
     
 0.576
LOC106954728
Trafficking protein particle complex subunit 2.
     
 0.576
ENSPLAP00000010230
Protein O-fucosyltransferase 2.
     
 0.555
LOC106962469
Protein O-fucosyltransferase 2.
     
 0.555
LOC106941507
Uncharacterized protein.
     
 0.555
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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