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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ca6Carbonic anhydrase VI; Belongs to the alpha-carbonic anhydrase family. (537 aa)    
Predicted Functional Partners:
rpf2
Ribosome production factor 2 homolog.
   
 
 0.717
ENSPLAP00000016289
Uncharacterized protein.
    
 
 0.626
ENSPLAP00000004342
Lamin B1; Belongs to the intermediate filament family.
    
 
 0.610
nxf1
Zgc:153681.
      
 0.593
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.573
RPL5
Ribosomal protein L5.
    
 
 0.570
RPL5-2
Ribosomal protein L5b.
    
 
 0.570
ca10
Carbonic anhydrase Xa; Belongs to the alpha-carbonic anhydrase family.
  
   
0.551
ENSPLAP00000005064
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
 
 0.548
LOC106960684
Liver-enriched gene 1, tandem duplicate 1.
   
  
 0.541
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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