Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
LOC106954546Leucine rich repeat and fibronectin type III domain containing 5b. (802 aa)    
Predicted Functional Partners:
trappc6a
Trafficking protein particle complex 6b-like.
   
  
 0.660
pnn
Pinin, desmosome associated protein.
      
 0.643
LOC106934788
MAM domain-containing protein.
   
 0.588
MDGA2
MAM domain containing glycosylphosphatidylinositol anchor 2.
   
 0.588
zglp1
GATA-type domain-containing protein.
    
 
 0.560
fbxo33
F-box protein 33.
      
 0.531
rabepk
Rab9 effector protein with kelch motifs.
      
 0.523
nudc
NudC nuclear distribution protein.
      
 0.521
ccdc32
Coiled-coil domain containing 32.
      
 0.521
lrrc61
Leucine rich repeat containing 61.
    
 
 0.514
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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