Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubox5U-box domain containing 5. (632 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 0.974
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.892
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
    
 0.856
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
    
 0.856
ptpra
Receptor-type tyrosine-protein phosphatase alpha.
      
 0.850
mlh1
MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).
  
   0.838
ube2z
Ubiquitin-conjugating enzyme E2Z.
   
 0.827
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.821
faap100
Si:dkey-57h18.1.
    
 
 0.821
LOC106936332
YOD1 deubiquitinase.
    
 
 0.811
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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