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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubox5U-box domain containing 5. (632 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 0.942
ENSPLAP00000000046
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.941
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.929
ube2z
Ubiquitin-conjugating enzyme E2Z.
   
 0.874
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.847
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
   
 0.847
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.841
faap100
Si:dkey-57h18.1.
    
 
 0.841
LOC106936332
YOD1 deubiquitinase.
    
 
 0.836
LOC106940083
Ubiquitin thioesterase OTU1.
    
 
 0.836
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.