STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smarca5SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1035 aa)    
Predicted Functional Partners:
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
    
 0.993
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
   
 0.985
cecr2
Bromo domain-containing protein.
    
 0.980
pole3
Polymerase (DNA directed), epsilon 3 (p17 subunit).
    
 0.974
LOC106952289
Retinoblastoma binding protein 4.
   
 0.971
ENSPLAP00000014870
CAF1C_H4-bd domain-containing protein.
   
 0.971
chrac1
Chromatin accessibility complex subunit 1.
    
 
 0.964
BPTF
Bromodomain PHD finger transcription factor.
   
 
 0.935
LOC106959599
Bromodomain PHD finger transcription factor.
   
 
 0.935
rsf1
PHD-type domain-containing protein.
   
 0.924
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.