STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106953701Tumor susceptibility 101a. (390 aa)    
Predicted Functional Partners:
vps28
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
   
 0.972
vps37b
Zgc:114173.
    
 0.962
hgs
Hepatocyte growth factor-regulated tyrosine kinase substrate.
    
 0.960
LOC106945969
Uncharacterized protein.
    
 0.951
rps27a
Ribosomal protein S27a.
    
 0.938
vps37a
VPS37A subunit of ESCRT-I.
   
 0.911
vps36
Vacuolar protein sorting 36 homolog.
    
 0.909
LOC106939771
VPS37C subunit of ESCRT-I.
    
 0.882
stam
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.
   
 0.863
ENSPLAP00000015559
Ubiquitin-like domain-containing protein.
    
 0.861
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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