Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
c1qtnf6C1q and TNF related 6b. (242 aa)    
Predicted Functional Partners:
vstm4
V-set and transmembrane domain containing 4b.
      
 0.540
ENSPLAP00000029519
Ig-like domain-containing protein.
      
 0.540
atp6v0a2
V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.
      
 0.525
LOC106947144
Gamma-aminobutyric acid (GABA) A receptor, alpha 3; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
      
 0.522
ENSPLAP00000022869
Uncharacterized protein.
      
 0.521
LOC106936960
Tumor necrosis factor b (TNF superfamily, member 2).
      
 0.520
pamr1
Peptidase domain containing associated with muscle regeneration 1; Belongs to the peptidase S1 family.
      
 0.513
ENSPLAP00000007405
Fibrinogen C-terminal domain-containing protein.
      
 0.510
LOC106951699
Si:ch1073-416d2.3; Belongs to the serpin family.
      
 0.510
clic4
Chloride intracellular channel protein; Belongs to the chloride channel CLIC family.
      
 0.508
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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