Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC106955166Zgc:175088. (175 aa)    
Predicted Functional Partners:
fbxo4
F-box protein 4.
     
 0.952
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
     
 0.946
fbxw7
F-box and WD repeat domain containing 7.
    
 0.937
LOC106952655
Uncharacterized protein.
    
 0.937
fbxw11
F-box and WD repeat domain containing 11b.
     
 0.904
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.894
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.885
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.871
cops2
COP9 signalosome subunit 2.
    
  0.711
LOC106939209
Leucine rich repeat containing 29.
     
 0.708
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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