Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdlim4PDZ and LIM domain 4. (340 aa)    
Predicted Functional Partners:
ptpn13
Protein tyrosine phosphatase non-receptor type 13.
    
 0.727
ENSPLAP00000015978
KIND domain-containing protein.
    
 0.727
LOC106950391
PDZ and LIM domain 2 (mystique).
  
  
0.697
RSPH1
Radial spoke head component 1.
   
  
 0.686
LOC106949590
LIM domain containing preferred translocation partner in lipoma.
   
 
 0.608
LOC106934597
Uncharacterized protein.
   
 
 0.608
trip6
Uncharacterized protein.
   
 
 0.608
LOC106948770
LIM domain binding 3b.
    
 
0.590
LOC106939688
PDZ domain-containing protein.
   
 
0.551
ENSPLAP00000007787
PDZ and LIM domain 5a.
   
 
 0.551
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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