Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
nptxrNeuronal pentraxin receptor b. (534 aa)    
Predicted Functional Partners:
rnf2
Ring finger protein 2.
    
 0.705
RING1
Ring finger protein 1.
    
 0.705
eed
Embryonic ectoderm development.
    
 0.589
LOC106947869
Mesoderm induction early response 1, family member 2.
      
 0.514
ENSPLAP00000029598
Gamma-aminobutyric acid (GABA) A receptor, alpha 6a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
      
 0.511
PCGF3
Polycomb group ring finger 3.
    
  0.497
commd3
COMM domain containing 3.
    
  0.497
pcgf5
Polycomb group ring finger 5a.
    
  0.497
pcgf2
Polycomb group ring finger 2.
    
  0.497
pcgf6
Polycomb group ring finger 6.
    
  0.497
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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