STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vta1Vesicle (multivesicular body) trafficking 1. (241 aa)    
Predicted Functional Partners:
chmp1a
Charged multivesicular body protein 1A.
    
 0.993
chmp1b
Chromatin modifying protein 1B.
    
 0.992
ENSPLAP00000025956
Uncharacterized protein.
    
 0.992
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
   
 0.989
LOC106945097
Charged multivesicular body protein 5b.
   
 0.988
chmp5
Charged multivesicular body protein 5a.
   
 0.988
LOC106939979
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
   
 0.987
LOC106942951
Vacuolar protein sorting-associated protein 4A.
   
 0.987
LOC106955782
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.986
ist1
IST1 factor associated with ESCRT-III.
   
 
 0.972
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.