STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clstn3Calsyntenin 3. (944 aa)    
Predicted Functional Partners:
lrrtm1
Leucine rich repeat transmembrane neuronal 1.
   
  
 0.614
cdca3
Si:ch211-69g19.2.
      
 0.594
usp5
Ubiquitin carboxyl-terminal hydrolase.
      
 0.594
pex5
Peroxisomal biogenesis factor 5.
   
  
 0.594
erp27
Uncharacterized protein.
      
 0.550
LOC106952234
Guanine nucleotide binding protein (G protein), beta polypeptide 3b.
      
 0.543
gnb3
Guanine nucleotide binding protein (G protein), beta polypeptide 3a.
      
 0.513
telo2
TEL2, telomere maintenance 2, homolog (S. cerevisiae).
      
 0.511
s100b
S100 calcium binding protein, beta (neural); Belongs to the S-100 family.
   
  
 0.495
LOC106940002
Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase; Catalyzes the third of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors [...]
      
 0.483
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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