pcmt1 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pcmt1

Protein-L-isoaspartate (D-aspartate) O-methyltransferase. (270 aa)

Predicted Functional Partners:

tmbim6

0.551

DHX15

0.530

nus1

0.520

borcs5

0.517

dera

0.515

LOC106947655

0.510

sod2

0.506

LOC106950072

0.504

ttc7a

0.503

ttc7b

0.503

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHX15	pcmt1	ENSPLAP00000025882	ENSPLAP00000002693	DEAH-box helicase 15.	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	0.530
LOC106947655	pcmt1	ENSPLAP00000020580	ENSPLAP00000002693	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	0.510
LOC106950072	nus1	ENSPLAP00000013823	ENSPLAP00000015005	Transmembrane protein 183A.	NUS1 dehydrodolichyl diphosphate synthase subunit.	0.590
LOC106950072	pcmt1	ENSPLAP00000013823	ENSPLAP00000002693	Transmembrane protein 183A.	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	0.504
borcs5	pcmt1	ENSPLAP00000022166	ENSPLAP00000002693	BLOC-1 related complex subunit 5.	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	0.517
dera	pcmt1	ENSPLAP00000007722	ENSPLAP00000002693	Deoxyribose-phosphate aldolase (putative).	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	0.515
nus1	LOC106950072	ENSPLAP00000015005	ENSPLAP00000013823	NUS1 dehydrodolichyl diphosphate synthase subunit.	Transmembrane protein 183A.	0.590
nus1	pcmt1	ENSPLAP00000015005	ENSPLAP00000002693	NUS1 dehydrodolichyl diphosphate synthase subunit.	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	0.520
pcmt1	DHX15	ENSPLAP00000002693	ENSPLAP00000025882	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	DEAH-box helicase 15.	0.530
pcmt1	LOC106947655	ENSPLAP00000002693	ENSPLAP00000020580	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).	0.510
pcmt1	LOC106950072	ENSPLAP00000002693	ENSPLAP00000013823	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	Transmembrane protein 183A.	0.504
pcmt1	borcs5	ENSPLAP00000002693	ENSPLAP00000022166	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	BLOC-1 related complex subunit 5.	0.517
pcmt1	dera	ENSPLAP00000002693	ENSPLAP00000007722	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	Deoxyribose-phosphate aldolase (putative).	0.515
pcmt1	nus1	ENSPLAP00000002693	ENSPLAP00000015005	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	NUS1 dehydrodolichyl diphosphate synthase subunit.	0.520
pcmt1	sod2	ENSPLAP00000002693	ENSPLAP00000007579	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.506
pcmt1	tmbim6	ENSPLAP00000002693	ENSPLAP00000028086	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	Testis enhanced gene transcript (BAX inhibitor 1); Belongs to the BI1 family.	0.551
pcmt1	ttc7a	ENSPLAP00000002693	ENSPLAP00000015364	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	Tetratricopeptide repeat domain 7A.	0.503
pcmt1	ttc7b	ENSPLAP00000002693	ENSPLAP00000017786	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	Tetratricopeptide repeat domain 7B.	0.503
sod2	pcmt1	ENSPLAP00000007579	ENSPLAP00000002693	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	0.506
tmbim6	pcmt1	ENSPLAP00000028086	ENSPLAP00000002693	Testis enhanced gene transcript (BAX inhibitor 1); Belongs to the BI1 family.	Protein-L-isoaspartate (D-aspartate) O-methyltransferase.	0.551