STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nefmNeurofilament, medium polypeptide a; Belongs to the intermediate filament family. (902 aa)    
Predicted Functional Partners:
LOC106941021
Peripherin; Belongs to the intermediate filament family.
    
 
0.653
LOC106947909
Un-named hu7910.
   
 
 0.645
ENSPLAP00000009052
ANF_receptor domain-containing protein.
   
 0.635
grin1
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
 0.635
LOC106945532
Si:ch73-335l21.4.
   
  0.628
asph
Asp-B-Hydro_N domain-containing protein.
   
 
 0.622
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.617
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.616
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.616
LOC106941889
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
   
 0.614
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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