LOC106953186 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106953186

Uncharacterized protein. (2393 aa)

Predicted Functional Partners:

zdhhc24

0.617

ENSPLAP00000014192

0.604

RAD23B

0.602

rad23a

0.602

ENSPLAP00000012682

0.566

ENSPLAP00000012707

0.566

exoc2

0.550

LOC106962473

0.548

ENSPLAP00000028929

0.548

asxl2

0.526

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000012682	ENSPLAP00000012707	ENSPLAP00000012682	ENSPLAP00000012707	Uncharacterized protein.	Uncharacterized protein.	0.981
ENSPLAP00000012682	ENSPLAP00000014192	ENSPLAP00000012682	ENSPLAP00000014192	Uncharacterized protein.	NDK domain-containing protein.	0.958
ENSPLAP00000012682	LOC106953186	ENSPLAP00000012682	ENSPLAP00000003113	Uncharacterized protein.	Uncharacterized protein.	0.566
ENSPLAP00000012707	ENSPLAP00000012682	ENSPLAP00000012707	ENSPLAP00000012682	Uncharacterized protein.	Uncharacterized protein.	0.981
ENSPLAP00000012707	ENSPLAP00000014192	ENSPLAP00000012707	ENSPLAP00000014192	Uncharacterized protein.	NDK domain-containing protein.	0.958
ENSPLAP00000012707	LOC106953186	ENSPLAP00000012707	ENSPLAP00000003113	Uncharacterized protein.	Uncharacterized protein.	0.566
ENSPLAP00000014192	ENSPLAP00000012682	ENSPLAP00000014192	ENSPLAP00000012682	NDK domain-containing protein.	Uncharacterized protein.	0.958
ENSPLAP00000014192	ENSPLAP00000012707	ENSPLAP00000014192	ENSPLAP00000012707	NDK domain-containing protein.	Uncharacterized protein.	0.958
ENSPLAP00000014192	ENSPLAP00000028929	ENSPLAP00000014192	ENSPLAP00000028929	NDK domain-containing protein.	BRCT domain-containing protein.	0.411
ENSPLAP00000014192	LOC106953186	ENSPLAP00000014192	ENSPLAP00000003113	NDK domain-containing protein.	Uncharacterized protein.	0.604
ENSPLAP00000014192	LOC106962473	ENSPLAP00000014192	ENSPLAP00000025950	NDK domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.411
ENSPLAP00000014192	RAD23B	ENSPLAP00000014192	ENSPLAP00000003025	NDK domain-containing protein.	RAD23 homolog B, nucleotide excision repair protein.	0.537
ENSPLAP00000014192	rad23a	ENSPLAP00000014192	ENSPLAP00000021476	NDK domain-containing protein.	RAD23 homolog A, nucleotide excision repair protein a.	0.537
ENSPLAP00000028929	ENSPLAP00000014192	ENSPLAP00000028929	ENSPLAP00000014192	BRCT domain-containing protein.	NDK domain-containing protein.	0.411
ENSPLAP00000028929	LOC106953186	ENSPLAP00000028929	ENSPLAP00000003113	BRCT domain-containing protein.	Uncharacterized protein.	0.548
ENSPLAP00000028929	LOC106962473	ENSPLAP00000028929	ENSPLAP00000025950	BRCT domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.976
ENSPLAP00000028929	RAD23B	ENSPLAP00000028929	ENSPLAP00000003025	BRCT domain-containing protein.	RAD23 homolog B, nucleotide excision repair protein.	0.781
ENSPLAP00000028929	rad23a	ENSPLAP00000028929	ENSPLAP00000021476	BRCT domain-containing protein.	RAD23 homolog A, nucleotide excision repair protein a.	0.781
ENSPLAP00000028929	zdhhc24	ENSPLAP00000028929	ENSPLAP00000018526	BRCT domain-containing protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.401
LOC106953186	ENSPLAP00000012682	ENSPLAP00000003113	ENSPLAP00000012682	Uncharacterized protein.	Uncharacterized protein.	0.566