STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
itga1Integrin, alpha 1; Belongs to the integrin alpha chain family. (1138 aa)    
Predicted Functional Partners:
LOC106964138
Integrin beta; Belongs to the integrin beta chain family.
   
 0.957
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.955
lamb1
Laminin, beta 1a.
    
 0.928
lamc1
Laminin, gamma 1.
    
 0.927
LOC106951719
Laminin, gamma 3.
    
 0.924
ENSPLAP00000006573
Uncharacterized protein.
    
 0.923
tnr
Tenascin R (restrictin, janusin).
    
 0.920
LOC106944581
Paxillin; Cytoskeletal protein involved in actin-membrane attachment at sites of cell adhesion to the extracellular matrix (focal adhesion). Belongs to the paxillin family.
    
  0.917
LOC106943660
Uncharacterized protein.
    
 0.914
LOC106943606
Laminin, beta 2 (laminin S).
    
 0.914
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.