Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
itga1Integrin, alpha 1; Belongs to the integrin alpha chain family. (1138 aa)    
Predicted Functional Partners:
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.941
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.891
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.886
itgb3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.878
LOC106950752
Integrin beta; Belongs to the integrin beta chain family.
   
 0.878
LOC106949493
Integrin beta.
   
 0.875
itgb4
Integrin beta.
   
 0.874
LOC106964138
Integrin beta; Belongs to the integrin beta chain family.
   
 0.873
LOC106945598
Talin 2a.
    
 0.860
LOC106940722
I/LWEQ domain-containing protein.
    
 0.860
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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