Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106955782Uncharacterized protein; Belongs to the AAA ATPase family. (437 aa)    
Predicted Functional Partners:
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.994
LOC106945097
Charged multivesicular body protein 5b.
   
 0.985
chmp5
Charged multivesicular body protein 5a.
   
 0.985
chmp1b
Chromatin modifying protein 1B.
   
 0.974
chmp1a
Charged multivesicular body protein 1A.
   
 0.974
ENSPLAP00000025956
Uncharacterized protein.
   
 0.974
ist1
IST1 factor associated with ESCRT-III.
   
 0.953
chmp3
Charged multivesicular body protein 3.
   
 0.949
chmp2a
Charged multivesicular body protein 2A.
    
 0.948
chmp2b
Charged multivesicular body protein 2Bb.
   
 0.937
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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