LOC106937897 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106937897	LOC106939328	ENSPLAP00000003244	ENSPLAP00000005396	Uncharacterized protein.	Sorting nexin 12.	0.945
LOC106937897	LOC106951219	ENSPLAP00000003244	ENSPLAP00000001189	Uncharacterized protein.	Sorting nexin 1a.	0.873
LOC106937897	LOC106954695	ENSPLAP00000003244	ENSPLAP00000029158	Uncharacterized protein.	Uncharacterized protein.	0.882
LOC106937897	SNX27	ENSPLAP00000003244	ENSPLAP00000030826	Uncharacterized protein.	Sorting nexin 27.	0.882
LOC106937897	snx3	ENSPLAP00000003244	ENSPLAP00000000747	Uncharacterized protein.	Sorting nexin 3.	0.945
LOC106937897	tbc1d5	ENSPLAP00000003244	ENSPLAP00000018182	Uncharacterized protein.	TBC1 domain family, member 5.	0.955
LOC106937897	vps26a	ENSPLAP00000003244	ENSPLAP00000009728	Uncharacterized protein.	VPS26, retromer complex component A.	0.993
LOC106937897	vps26b	ENSPLAP00000003244	ENSPLAP00000016436	Uncharacterized protein.	VPS26, retromer complex component B.	0.900
LOC106937897	vps29	ENSPLAP00000003244	ENSPLAP00000010499	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.990
LOC106937897	vps35	ENSPLAP00000003244	ENSPLAP00000010614	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.995
LOC106939328	LOC106937897	ENSPLAP00000005396	ENSPLAP00000003244	Sorting nexin 12.	Uncharacterized protein.	0.945
LOC106939328	LOC106951219	ENSPLAP00000005396	ENSPLAP00000001189	Sorting nexin 12.	Sorting nexin 1a.	0.545
LOC106939328	LOC106954695	ENSPLAP00000005396	ENSPLAP00000029158	Sorting nexin 12.	Uncharacterized protein.	0.705
LOC106939328	SNX27	ENSPLAP00000005396	ENSPLAP00000030826	Sorting nexin 12.	Sorting nexin 27.	0.705
LOC106939328	snx3	ENSPLAP00000005396	ENSPLAP00000000747	Sorting nexin 12.	Sorting nexin 3.	0.901
LOC106939328	tbc1d5	ENSPLAP00000005396	ENSPLAP00000018182	Sorting nexin 12.	TBC1 domain family, member 5.	0.740
LOC106939328	vps26a	ENSPLAP00000005396	ENSPLAP00000009728	Sorting nexin 12.	VPS26, retromer complex component A.	0.976
LOC106939328	vps26b	ENSPLAP00000005396	ENSPLAP00000016436	Sorting nexin 12.	VPS26, retromer complex component B.	0.945
LOC106939328	vps29	ENSPLAP00000005396	ENSPLAP00000010499	Sorting nexin 12.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.984
LOC106939328	vps35	ENSPLAP00000005396	ENSPLAP00000010614	Sorting nexin 12.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.993