Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pdxdc1Pyridoxal-dependent decarboxylase domain containing 1. (797 aa)    
Predicted Functional Partners:
LOC106941691
PPP1R35_C domain-containing protein.
      
 0.851
BFAR
Bifunctional apoptosis regulator.
      
 0.720
ntan1
Uncharacterized protein.
      
 0.720
rrn3
RRN3 homolog, RNA polymerase I transcription factor.
      
 0.720
tatdn2
TatD DNase domain containing 2.
      
 0.719
kiaa2013
Si:dkeyp-104h9.5.
      
 0.715
pagr1
PAXIP1 associated glutamate-rich protein 1.
      
 0.708
ccdc6
Coiled-coil domain containing 6a.
      
 0.685
hsbp1
Heat shock factor binding protein 1a.
      
 0.684
LOC106954542
BAH domain-containing protein.
      
 0.683
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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