Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSPLAP00000003301Keratin 222; Belongs to the intermediate filament family. (268 aa)    
Predicted Functional Partners:
ENSPLAP00000020292
Uncharacterized protein.
    
 0.757
LOC106947658
Keratin 5; Belongs to the intermediate filament family.
   
 0.730
ranbp2
RAN binding protein 2.
    
 0.641
ino80e
INO80 complex subunit E.
    
  0.623
has1
Hyaluronan synthase 1.
    
 
 0.601
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
    
  0.596
sympk
Symplekin.
    
  0.595
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.591
LOC106954370
FIP1 like 1b (S. cerevisiae).
    
  0.588
ENSPLAP00000018148
CPSF_A domain-containing protein.
    
  0.587
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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